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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1273
total RNA-seq
1151
ChIP-seq
459
ATAC-seq
367
single cell RNA-seq
207
DNase-seq
87
RNA microarray
84
snATAC-seq
WGBS
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1658
Transcription
1151
DNA binding
755
DNA accessibility
26
3D chromatin structure
22
DNA methylation
Target of assay
841
histone modification
840
histone
431
narrow histone mark
409
broad histone mark
211
control
104
transcription factor
38
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
586
February, 2021
340
May, 2020
334
August, 2017
233
August, 2021
230
October, 2019
229
May, 2021
218
June, 2019
183
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
96
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
24
February, 2020
23
October, 2017
21
March, 2020
21
November, 2018
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2019
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
August, 2022
1
March, 2023
Available data
2456
bam
2338
bigWig
1315
tsv
1252
bed narrowPeak
770
fastq
644
bigBed narrowPeak
338
tagAlign
260
bed broadPeak
239
bed bed3+
223
bigBed broadPeak
157
txt
112
zippedFastqFolder
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
3697
Homo sapiens
Biosample type
2682
tissue
1024
primary cell
655
cell line
389
in vitro differentiated cells
6
stem cell
Organ
799
pancreas
577
connective tissue
483
adipose tissue
374
epithelium
370
liver
335
kidney
315
heart
284
brain
167
vasculature
161
blood vessel
158
bone element
121
limb
94
musculature of body
75
artery
57
eye
nerve
22
spleen
22
vein
19
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
3144
AMP
277
HPAP
218
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
2351
hg19
2348
GRCh38
Lab
2854
AMP-T2D consortium
277
Klaus Kaestner, Upenn
274
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
142
inconsistent ontology term
40
audit script error
27
inconsistent control
Audit category:
70
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
WGBS
pCHi-C
organ_slims!
nerve
BIOSAMPLE
ASSAY
3706 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans
292
71
68
6
1
7
3
1
1
4
adipose tissue
382
2
3
liver
167
145
20
1
2
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
+ See 166 more…
primary cell
monocyte
54
85
15
1
Langerhans cell
85
48
pancreatic alpha cell
52
13
35
12
1
pancreatic beta cell
21
13
23
12
1
CD8-positive, alpha-beta T cell
4
33
2
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