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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
STARR-seq
2
Hi-C
1
ATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
total RNA-seq
Assay category
5
Transcription
2
3D chromatin structure
1
DNA accessibility
Date released
5
August, 2021
4
March, 2023
2
March, 2019
Available data
1
bedpe
1
bedpe bed3+
1
hic
1
tsv
Organism
7
Homo sapiens
Biosample type
5
cell line
4
tissue
2
stem cell
Organ
liver
4
pancreas
2
kidney
Project
7
AMP
4
community
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
3132
AMP-T2D consortium
326
Kyle Gaulton, UCSD
277
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
WGBS
pCHi-C
organ_slims!
liver
BIOSAMPLE
ASSAY
11 results
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STARR-seq
Hi-C
ATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
total RNA-seq
cell line
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
2
1
1
stem cell
SB Ad3.1
1
1
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