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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
single cell RNA-seq
88
ChIP-seq
76
snATAC-seq
60
ATAC-seq
WGBS
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
201
Transcription
136
DNA accessibility
88
DNA binding
3
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
152
May, 2021
99
February, 2023
60
May, 2022
45
May, 2020
27
February, 2021
19
September, 2020
16
January, 2021
10
April, 2020
7
August, 2020
7
March, 2020
4
March, 2023
3
October, 2022
Available data
196
bigWig
186
bam
129
fastq
98
tsv
88
bed narrowPeak
84
tagAlign
60
zippedFastqFolder
3
bedpe bed3+
3
cool
3
hic
Organism
444
Homo sapiens
Biosample type
396
primary cell
40
tissue
11
cell line
2
stem cell
Organ
139
pancreas
109
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
thymus
Project
AMP
243
T1D
192
HPAP
10
LungMap
4
community
ITG
Genome assembly (visualization)
196
GRCh38
189
hg19
Lab
235
Kyle Gaulton, UCSD
192
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
30
audit script error
9
inconsistent ontology term
assay_title!
WGBS
single cell RNA-seq
award.project!
AMP
ITG
organ_slims!
thymus
BIOSAMPLE
ASSAY
449 results
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total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
pancreatic alpha cell
42
29
1
Langerhans cell
48
exocrine cell
39
pancreatic beta cell
11
16
1
+ See 36 more…
tissue
islet of Langerhans
7
2
6
11
lung
10
pancreas
4
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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