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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
834
ChIP-seq
634
total RNA-seq
254
ATAC-seq
single cell RNA-seq
176
DNase-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
834
DNA binding
648
Transcription
462
DNA accessibility
16
3D chromatin structure
11
DNA methylation
Target of assay
596
histone modification
595
histone
312
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
241
October, 2019
224
August, 2017
193
May, 2020
162
June, 2019
153
February, 2021
122
August, 2021
120
July, 2018
115
May, 2019
93
February, 2023
82
November, 2017
80
April, 2019
65
May, 2022
55
July, 2019
51
October, 2018
48
December, 2017
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
23
February, 2020
22
October, 2017
19
November, 2018
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
1
August, 2022
1
January, 2018
Available data
1446
bam
1329
bigWig
971
bed narrowPeak
568
tsv
551
bigBed narrowPeak
321
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
144
txt
64
xls
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2080
Homo sapiens
Biosample type
2088
tissue
661
cell line
660
primary cell
391
in vitro differentiated cells
10
stem cell
Organ
541
connective tissue
495
pancreas
adipose tissue
356
liver
265
brain
235
kidney
212
heart
158
bone element
125
blood vessel
125
vasculature
121
limb
80
musculature of body
71
artery
56
eye
43
nerve
23
spleen
18
ureter
16
skeleton
15
epithelium
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2047
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1417
GRCh38
1325
hg19
Lab
1803
AMP-T2D consortium
131
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
10
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
WGBS
single cell RNA-seq
lab.title!
Klaus Kaestner, Upenn
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
2088 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
71
292
68
1
7
4
3
1
1
4
liver
145
167
20
2
1
1
1
1
kidney
27
49
75
13
6
1
1
1
bone element
84
bone tissue
58
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