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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
402
total RNA-seq
73
ChIP-seq
18
ATAC-seq
WGBS
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
402
Transcription
73
DNA binding
20
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
394
February, 2021
51
August, 2017
23
October, 2018
9
February, 2023
9
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
445
bam
420
bigWig
398
tsv
41
fastq
21
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
4
bed bed3
4
txt
3
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
497
Homo sapiens
Biosample type
496
tissue
1
in vitro differentiated cells
1
primary cell
Organ
893
pancreas
783
liver
675
connective tissue
482
adipose tissue
477
epithelium
384
heart
353
kidney
282
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
93
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
498
AMP
Genome assembly (visualization)
435
hg19
427
GRCh38
Lab
498
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
WGBS
small RNA-seq
organ_slims!
large intestine
BIOSAMPLE
ASSAY
498 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
2
white adipose tissue
12
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in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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