Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
38
ATAC-seq
9
DNase-seq
total RNA-seq
6
single cell RNA-seq
5
Hi-C
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
93
DNA binding
48
DNA accessibility
6
Transcription
5
3D chromatin structure
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
19
control
4
RNA binding protein
4
transcription factor
Date released
50
May, 2019
47
October, 2019
35
February, 2023
6
August, 2021
5
June, 2019
4
July, 2019
3
March, 2020
3
November, 2017
Available data
117
bed narrowPeak
106
bam
87
bigWig
79
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
7
tsv
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
tar
Organism
153
Homo sapiens
Biosample type
124
tissue
29
primary cell
cell line
Organ
439
pancreas
301
epithelium
299
heart
279
kidney
269
brain
211
liver
204
connective tissue
159
vasculature
153
blood vessel
114
limb
97
bone element
89
musculature of body
87
adipose tissue
71
artery
42
eye
38
nerve
23
embryo
23
spleen
22
vein
20
lung
18
ureter
12
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
153
AMP
Genome assembly (visualization)
116
GRCh38
89
hg19
Lab
153
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
WGBS
total RNA-seq
biosample_type!
cell line
BIOSAMPLE
ASSAY
153 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery
5
36
2
tibial artery
23
1
2
aorta
13
4
1
1
ascending aorta
16
1
thoracic aorta
16
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
See all biosamples
Download