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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
total RNA-seq
WGBS
3
Hi-C
3
pCHi-C
2
ATAC-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
120
DNA binding
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
1
DNA sequencing
1
Transcription
Target of assay
95
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
33
August, 2017
24
May, 2020
13
December, 2017
9
August, 2021
3
February, 2021
2
March, 2020
1
December, 2018
1
July, 2019
1
November, 2018
1
October, 2019
Available data
521
bam
bigWig
458
fastq
441
bed narrowPeak
358
bigBed narrowPeak
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
5
tsv
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
135
Homo sapiens
Biosample type
71
tissue
60
cell line
3
primary cell
1
in vitro differentiated cells
Organ
203
pancreas
174
kidney
164
heart
135
liver
121
epithelium
103
connective tissue
97
bone element
77
vasculature
76
blood vessel
59
adipose tissue
54
artery
52
brain
36
eye
28
limb
26
musculature of body
20
lung
14
blood
14
bodily fluid
12
skeleton
11
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
135
AMP
Genome assembly (visualization)
8
hg19
3
GRCh38
Lab
127
AMP-T2D consortium
8
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
assay_title!
WGBS
total RNA-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
135 results
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Clear Filters
ChIP-seq
Hi-C
pCHi-C
ATAC-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
63
1
1
1
1
right lobe of liver
3
1
cell line
HepG2
52
2
2
1
2
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
1
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