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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
97
total RNA-seq
29
ATAC-seq
10
DNase-seq
WGBS
6
single cell RNA-seq
3
RRBS
2
FAIRE-seq
Assay category
220
DNA binding
103
Transcription
41
DNA accessibility
3
DNA methylation
Target of assay
79
transcription factor
74
histone modification
73
histone
67
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
171
August, 2017
58
October, 2018
48
December, 2017
24
May, 2022
20
November, 2018
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
1890
bam
1756
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
367
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
360
Homo sapiens
Biosample type
426
cell line
403
primary cell
367
tissue
137
in vitro differentiated cells
3
stem cell
Organ
209
pancreas
82
liver
40
adipose tissue
40
connective tissue
22
spleen
12
brain
2
musculature of body
Project
367
AMP
Genome assembly (visualization)
294
hg19
272
GRCh38
Lab
341
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
WGBS
whole genome sequencing assay
assembly!
hg18
BIOSAMPLE
ASSAY
367 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
28
97
20
1
6
1
liver
67
2
1
body of pancreas
33
4
2
spleen
20
1
1
pancreas
16
1
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