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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
294
ChIP-seq
174
single cell RNA-seq
135
total RNA-seq
102
ATAC-seq
87
RNA microarray
27
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
309
Transcription
294
DNA binding
134
DNA accessibility
16
3D chromatin structure
11
DNA methylation
Target of assay
162
control
133
histone
133
histone modification
72
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
119
August, 2017
93
February, 2021
81
October, 2019
66
May, 2022
60
February, 2023
47
September, 2023
31
March, 2020
31
May, 2020
29
October, 2018
25
February, 2020
25
November, 2017
May, 2019
19
April, 2020
16
April, 2019
12
December, 2017
12
July, 2019
9
October, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
2
January, 2018
2
May, 2021
August, 2022
1
January, 2019
1
November, 2019
Available data
180
bam
159
tsv
157
txt
122
tagAlign
100
bed narrowPeak
95
fastq
59
bigWig
22
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
5
bigBed narrowPeak
1
bed bed3+
1
bedpe
Organism
880
Homo sapiens
Biosample type
883
tissue
504
primary cell
198
cell line
129
in vitro differentiated cells
7
stem cell
Organ
134
kidney
119
liver
117
pancreas
114
heart
92
bone element
63
connective tissue
62
adipose tissue
59
brain
53
eye
38
musculature of body
24
limb
20
lung
16
blood vessel
16
vasculature
15
epithelium
12
nerve
9
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
788
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1662
hg19
Lab
649
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assay_title!
WGBS
assembly!
GRCh38
month_released!
August, 2022
May, 2019
BIOSAMPLE
ASSAY
883 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
46
32
46
6
4
3
1
1
4
kidney
7
64
49
6
1
1
1
liver
70
1
20
20
1
1
1
bone element
84
subcutaneous abdominal adipose tissue
36
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