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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
165
single cell RNA-seq
138
ATAC-seq
135
total RNA-seq
87
RNA microarray
WGBS
24
pCHi-C
17
DNase-seq
17
snATAC-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
378
DNA binding
300
Transcription
172
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
190
histone
190
histone modification
184
control
105
broad histone mark
85
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
228
August, 2021
95
August, 2017
93
February, 2021
79
October, 2019
76
November, 2017
62
February, 2023
47
September, 2023
40
May, 2024
29
October, 2018
27
May, 2022
25
February, 2020
23
May, 2020
22
May, 2019
21
March, 2020
16
June, 2019
15
April, 2019
14
May, 2023
12
December, 2017
10
October, 2017
8
January, 2021
5
July, 2019
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
November, 2018
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
242
bam
207
bed narrowPeak
157
tsv
156
txt
133
tagAlign
109
bigWig
73
fastq
68
bigBed narrowPeak
64
xls
17
bed broadPeak
16
bed bed3+
16
bigBed broadPeak
6
csv
1
bedpe bed3+
Organism
973
Homo sapiens
Biosample type
975
tissue
413
primary cell
131
cell line
97
in vitro differentiated cells
7
stem cell
Organ
207
kidney
192
heart
122
brain
89
liver
88
bone element
88
pancreas
61
blood vessel
61
vasculature
59
connective tissue
58
adipose tissue
46
artery
26
eye
25
limb
20
musculature of body
12
nerve
9
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
large intestine
1
lung
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
899
AMP
47
KPMP
29
T1D
LungMap
Genome assembly (visualization)
1843
GRCh38
hg19
Lab
685
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assay_title!
WGBS
assembly!
hg19
award.project!
LungMap
organ_slims!
large intestine
BIOSAMPLE
ASSAY
975 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
pCHi-C
DNase-seq
snATAC-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney
7
64
75
49
6
islet of Langerhans
40
26
32
4
7
1
4
bone element
84
liver
62
1
20
1
left cardiac atrium
40
18
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