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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
95
total RNA-seq
86
single cell RNA-seq
56
snATAC-seq
WGBS
32
ChIP-seq
16
pCHi-C
9
DNase-seq
1
DNAme array
1
Hi-C
Assay category
181
DNA accessibility
181
Transcription
32
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
93
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
39
February, 2021
22
May, 2021
15
June, 2019
12
August, 2017
8
January, 2021
8
October, 2019
7
August, 2020
1
August, 2021
1
March, 2023
1
May, 2019
November, 2018
1
September, 2018
Available data
176
fastq
112
zippedFastqFolder
35
bam
17
bigWig
12
tsv
7
bed bed3+
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
1
csv
1
hic
1
tagAlign
Organism
412
Homo sapiens
Biosample type
992
tissue
412
primary cell
125
cell line
97
in vitro differentiated cells
7
stem cell
Organ
132
epithelium
114
pancreas
11
kidney
8
blood
8
bodily fluid
6
blood vessel
6
vasculature
5
connective tissue
5
vein
3
heart
2
musculature of body
1
bone element
1
bone marrow
1
eye
1
liver
Project
274
HPAP
113
AMP
24
T1D
1
ITG
Genome assembly (visualization)
hg19
536
GRCh38
Lab
274
Klaus Kaestner, Upenn
113
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
27
audit script error
12
inconsistent ontology term
assay_title!
WGBS
assembly!
hg19
month_released!
November, 2018
BIOSAMPLE
ASSAY
412 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
pCHi-C
DNase-seq
DNAme array
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
42
6
exocrine cell
39
pancreatic beta cell
16
11
6
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
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