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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
single cell RNA-seq
60
ChIP-seq
WGBS
3
DNase-seq
3
pCHi-C
3
total RNA-seq
Assay category
95
Transcription
60
DNA binding
3
DNA accessibility
Target of assay
35
histone
35
histone modification
20
broad histone mark
20
control
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
February, 2023
10
April, 2019
6
May, 2019
5
June, 2019
3
February, 2020
3
March, 2020
2
February, 2021
Available data
98
tsv
43
bed narrowPeak
43
bigWig
23
bam
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
tagAlign
Organism
161
Homo sapiens
Biosample type
156
tissue
3
primary cell
2
cell line
Organ
225
kidney
181
pancreas
161
heart
161
liver
126
epithelium
122
brain
85
bone element
85
connective tissue
59
adipose tissue
34
blood vessel
34
vasculature
25
limb
23
eye
22
musculature of body
20
lung
14
blood
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
161
AMP
Genome assembly (visualization)
225
GRCh38
hg19
Lab
121
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
assay_title!
WGBS
assembly!
hg19
month_released!
February, 2023
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
161 results
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single cell RNA-seq
ChIP-seq
DNase-seq
pCHi-C
total RNA-seq
tissue
left cardiac atrium
18
40
heart left ventricle
18
6
1
heart right ventricle
17
2
1
right cardiac atrium
18
1
1
aortic valve
4
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primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
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