Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
total RNA-seq
6
ChIP-seq
1
GRO-seq
Assay category
12
Transcription
6
DNA binding
Target of assay
5
control
1
histone
1
histone modification
1
narrow histone mark
Date released
8
August, 2021
7
February, 2018
3
December, 2017
1
January, 2018
Available data
30
bam
25
bigWig
23
fastq
bed narrowPeak
12
tsv
3
bed bed3+
Organism
19
Homo sapiens
Biosample type
11
in vitro differentiated cells
8
cell line
Organ
614
pancreas
595
connective tissue
472
adipose tissue
345
liver
257
epithelium
192
heart
160
kidney
101
vasculature
99
blood vessel
82
brain
67
artery
67
bone element
34
musculature of body
29
limb
28
eye
20
lung
19
embryo
16
nerve
15
blood
15
bodily fluid
9
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
19
AMP
Genome assembly (visualization)
13
GRCh38
13
hg19
1
hg18
Lab
19
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
WGBS
audit.ERROR.category!
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
19 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
6
1
cell line
H1-hESC
8
Download