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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
73
single cell RNA-seq
49
ATAC-seq
WGBS
21
snATAC-seq
Assay category
165
Transcription
70
DNA accessibility
Date released
93
May, 2022
76
February, 2023
59
September, 2020
February, 2021
7
August, 2020
Available data
124
fastq
112
zippedFastqFolder
10
bigWig
3
bedpe bed3+
cool
3
hic
Organism
235
Homo sapiens
Biosample type
235
primary cell
Organ
102
epithelium
102
pancreas
Project
235
HPAP
Genome assembly (visualization)
10
GRCh38
Lab
3158
AMP-T2D consortium
343
Kyle Gaulton, UCSD
235
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
assay_title!
WGBS
audit.WARNING.category!
inconsistent control read length
files.file_type!
cool
month_released!
February, 2021
BIOSAMPLE
ASSAY
235 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
primary cell
Langerhans cell
73
21
pancreatic alpha cell
42
29
exocrine cell
39
pancreatic beta cell
11
16
pancreatic acinar cell
4
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