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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1022
total RNA-seq
667
ChIP-seq
258
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
WGBS
16
small RNA-seq
11
RRBS
9
Hi-C
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1218
Transcription
667
DNA binding
468
DNA accessibility
11
DNA methylation
9
3D chromatin structure
Target of assay
440
histone modification
439
histone
227
broad histone mark
212
narrow histone mark
135
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
216
August, 2017
193
October, 2019
163
June, 2019
143
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
80
April, 2019
74
October, 2018
66
May, 2022
65
July, 2019
48
December, 2017
47
September, 2023
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
20
November, 2018
19
April, 2020
16
November, 2017
15
May, 2023
9
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1881
bam
1745
bigWig
1048
tsv
982
bed narrowPeak
561
bigBed narrowPeak
367
fastq
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
4
hic
3
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
2470
Homo sapiens
Biosample type
2472
tissue
939
primary cell
622
cell line
346
in vitro differentiated cells
6
stem cell
Organ
532
connective tissue
476
pancreas
473
adipose tissue
299
kidney
298
heart
284
liver
158
bone element
145
brain
128
blood vessel
128
vasculature
121
limb
73
artery
61
musculature of body
56
eye
43
nerve
22
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
2379
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
1718
GRCh38
1632
hg19
Lab
2120
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
WGBS
audit.WARNING.category!
inconsistent control run_type
files.file_type!
tagAlign
month_released!
March, 2020
BIOSAMPLE
ASSAY
2472 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
small RNA-seq
RRBS
Hi-C
pCHi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
290
60
66
6
1
7
1
3
4
1
4
adipose tissue
382
2
3
liver
166
75
20
1
2
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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