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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
total RNA-seq
9
DNase-seq
WGBS
6
ChIP-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
26
Transcription
10
DNA accessibility
6
DNA binding
Target of assay
transcription factor
20
RNA binding protein
16
recombinant protein
6
control
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
704
February, 2021
383
May, 2021
354
August, 2017
341
May, 2020
308
August, 2021
307
October, 2019
214
June, 2019
205
February, 2023
168
July, 2018
162
November, 2017
159
May, 2022
115
May, 2019
96
July, 2019
74
April, 2019
73
September, 2018
64
March, 2020
61
October, 2018
60
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
25
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
16
January, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
25
tsv
17
fastq
16
bam
10
bed narrowPeak
10
bigBed narrowPeak
10
bigWig
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
1
csv
Organism
42
Homo sapiens
Biosample type
38
tissue
3
cell line
1
primary cell
Organ
14
brain
4
liver
4
pancreas
4
spleen
3
adipose tissue
3
blood
3
blood vessel
3
bodily fluid
3
connective tissue
3
heart
3
limb
3
vasculature
2
artery
2
musculature of body
1
eye
1
nerve
1
spinal cord
Project
42
AMP
Genome assembly (visualization)
10
hg19
9
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
WGBS
audit.WARNING.category!
inconsistent control run_type
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
42 results
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total RNA-seq
DNase-seq
ChIP-seq
FAIRE-seq
single cell RNA-seq
tissue
spleen
1
3
body of pancreas
1
2
brain
2
liver
2
omental fat pad
1
1
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cell line
GM12878
3
primary cell
pancreatic cell
1
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