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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1167
total RNA-seq
1105
ChIP-seq
302
ATAC-seq
179
DNase-seq
135
single cell RNA-seq
87
RNA microarray
30
pCHi-C
WGBS
27
snATAC-seq
20
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
Assay category
1318
Transcription
1105
DNA binding
512
DNA accessibility
20
3D chromatin structure
11
DNA methylation
Target of assay
740
histone modification
739
histone
379
narrow histone mark
359
broad histone mark
224
control
143
transcription factor
39
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
571
February, 2021
343
August, 2017
271
August, 2021
250
October, 2019
193
May, 2020
172
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
111
February, 2023
91
December, 2017
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
65
July, 2019
48
March, 2020
45
November, 2019
40
May, 2024
39
February, 2018
25
February, 2020
23
October, 2017
20
November, 2018
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
November, 2020
1
August, 2018
August, 2022
Available data
2181
bam
2015
bigWig
1207
tsv
1116
bed narrowPeak
578
bigBed narrowPeak
508
fastq
278
tagAlign
230
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
160
txt
64
xls
17
bedpe bed3+
15
hic
10
bed bed3
9
bed bedMethyl
9
bigBed bedMethyl
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
3087
Homo sapiens
Biosample type
2702
tissue
1041
primary cell
661
cell line
394
in vitro differentiated cells
10
stem cell
Organ
638
connective tissue
503
pancreas
483
adipose tissue
372
liver
306
heart
265
brain
252
kidney
158
bone element
131
blood vessel
131
vasculature
121
limb
81
musculature of body
73
artery
56
eye
43
nerve
39
epithelium
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
3046
AMP
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
2108
GRCh38
2052
hg19
4
hg18
Lab
2737
AMP-T2D consortium
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
206
inconsistent ontology term
27
inconsistent control
10
audit script error
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
assay_title!
WGBS
award.project!
KPMP
month_released!
August, 2022
BIOSAMPLE
ASSAY
3096 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
tissue
islet of Langerhans
292
71
68
1
6
4
6
3
1
1
4
adipose tissue
382
2
3
1
liver
167
145
20
2
1
1
1
1
1
kidney
49
27
75
13
17
6
1
1
1
bone element
84
+ See 176 more…
in vitro differentiated cells
adipocyte
5
67
8
1
1
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
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