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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
single cell RNA-seq
70
ChIP-seq
28
total RNA-seq
22
ATAC-seq
Assay category
102
Transcription
70
DNA binding
22
DNA accessibility
Target of assay
58
histone
58
histone modification
31
narrow histone mark
27
broad histone mark
12
control
Date released
72
September, 2018
41
August, 2017
37
July, 2018
33
April, 2018
5
September, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
194
bam
189
fastq
182
bigWig
102
tsv
68
bed narrowPeak
22
bigBed narrowPeak
Organism
194
Homo sapiens
Biosample type
467
tissue
194
primary cell
88
cell line
3
in vitro differentiated cells
Organ
234
epithelium
194
pancreas
33
vasculature
29
blood vessel
23
kidney
22
vein
21
connective tissue
16
brain
12
liver
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
194
AMP
105
HPAP
Genome assembly (visualization)
182
GRCh38
182
hg19
Lab
194
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
WGBS
month_released!
June, 2019
BIOSAMPLE
ASSAY
194 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
primary cell
pancreatic beta cell
12
13
10
7
pancreatic alpha cell
12
13
10
6
pancreatic ductal cell
10
13
4
4
pancreatic acinar cell
12
8
4
5
pancreatic endocrine cell
23
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