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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
21
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
RRBS
WGBS
1
pCHi-C
Assay category
35
DNA accessibility
21
DNA binding
9
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
18
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
11
October, 2019
6
August, 2021
3
February, 2020
3
March, 2020
1
July, 2019
Available data
121
bed narrowPeak
117
bam
bigWig
83
bigBed narrowPeak
17
bed broadPeak
17
bigBed broadPeak
16
tsv
13
bed bed3+
6
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
70
Homo sapiens
Biosample type
62
tissue
cell line
8
primary cell
Organ
240
pancreas
216
kidney
157
heart
147
epithelium
110
connective tissue
101
bone element
96
liver
70
vasculature
69
blood vessel
64
brain
62
adipose tissue
55
eye
46
artery
31
limb
28
musculature of body
20
lung
16
skeleton
12
nerve
9
spleen
8
blood
8
bodily fluid
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
70
AMP
Genome assembly (visualization)
35
GRCh38
4
hg19
Lab
70
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
WGBS
biosample_type!
cell line
files.file_type!
bigWig
BIOSAMPLE
ASSAY
70 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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primary cell
endothelial cell of umbilical vein
5
2
choroid plexus epithelial cell
1
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