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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
110
total RNA-seq
23
ATAC-seq
17
pCHi-C
16
snATAC-seq
Assay category
149
DNA binding
110
Transcription
39
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
RNA binding protein
Date released
230
May, 2021
45
May, 2020
24
May, 2022
February, 2023
16
January, 2021
Available data
220
bigWig
204
bam
132
bed narrowPeak
96
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
315
Homo sapiens
Biosample type
239
primary cell
42
in vitro differentiated cells
34
tissue
Organ
33
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
213
T1D
102
AMP
Genome assembly (visualization)
238
hg19
180
GRCh38
Lab
3129
AMP-T2D consortium
315
Kyle Gaulton, UCSD
201
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
4
Struan F.A. Grant, CHOP
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
assay_title!
WGBS
biosample_type!
cell line
month_released!
February, 2023
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
315 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
snATAC-seq
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
32
5
5
tissue
islet of Langerhans
6
18
4
pancreas
1
4
thymus
1
See all biosamples
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