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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
59
total RNA-seq
46
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
WGBS
1
Hi-C
1
pCHi-C
Assay category
79
DNA binding
65
Transcription
51
DNA accessibility
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
35
February, 2023
26
October, 2019
6
August, 2021
5
July, 2019
3
February, 2020
3
June, 2019
3
March, 2020
Available data
151
bam
125
bigWig
112
bed narrowPeak
66
tsv
62
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bedpe bed3+
1
hic
Organism
197
Homo sapiens
Biosample type
131
tissue
66
cell line
primary cell
Organ
772
liver
639
connective tissue
596
pancreas
483
adipose tissue
372
heart
318
kidney
265
brain
197
blood vessel
197
vasculature
158
bone element
139
artery
121
limb
118
epithelium
81
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
23
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
197
AMP
Genome assembly (visualization)
168
GRCh38
134
hg19
Lab
197
AMP-T2D consortium
assay_title!
WGBS
biosample_type!
primary cell
month_released!
June, 2018
BIOSAMPLE
ASSAY
197 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
pCHi-C
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
aorta
13
1
4
1
1
ascending aorta
16
2
1
thoracic aorta
16
2
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
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