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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
Assay category
84
DNA binding
Target of assay
414
transcription factor
372
histone
372
histone modification
189
broad histone mark
182
narrow histone mark
150
control
89
recombinant protein
84
RNA binding protein
34
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
35
November, 2017
21
November, 2018
6
August, 2017
6
January, 2019
5
May, 2021
4
June, 2019
2
December, 2017
2
December, 2018
1
August, 2021
1
May, 2019
1
November, 2019
Available data
78
bam
77
bed narrowPeak
77
bigWig
72
fastq
71
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
1
tar
Organism
84
Homo sapiens
Biosample type
65
cell line
tissue
11
in vitro differentiated cells
8
primary cell
Organ
56
liver
10
blood
10
bodily fluid
8
epithelium
5
connective tissue
3
brain
2
kidney
vasculature
1
blood vessel
1
eye
1
heart
1
pancreas
Project
84
AMP
Genome assembly (visualization)
76
hg19
71
GRCh38
Lab
78
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
assay_title!
WGBS
biosample_type!
tissue
files.file_type!
bed bed3
organ_slims!
vasculature
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
cell line
HepG2
54
GM12878
10
EndoC_BH1
1
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
cardiac fibroblast
1
cardiac muscle cell
1
epithelial cell of proximal tubule
1
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