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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
Hi-C
3
pCHi-C
Assay category
9
3D chromatin structure
Date released
4
March, 2020
3
October, 2022
2
October, 2019
1
August, 2018
1
August, 2021
1
November, 2019
Available data
1386
bam
1311
bigWig
968
fastq
800
bed narrowPeak
464
tsv
460
bigBed narrowPeak
154
tagAlign
112
zippedFastqFolder
97
bed broadPeak
97
bigBed broadPeak
60
bed bed3+
12
bedpe bed3+
10
hic
9
bed bedMethyl
9
bigBed bedMethyl
bed bed3
7
bed bedgraph
4
txt
3
cool
3
hdf5
3
tar
2
csv
2
ibed
1
vcf
Organism
12
Homo sapiens
Biosample type
tissue
7
in vitro differentiated cells
3
primary cell
2
cell line
Organ
5
epithelium
4
pancreas
1
adipose tissue
1
blood vessel
1
connective tissue
1
liver
vasculature
1
vein
Project
9
AMP
3
HPAP
Genome assembly (visualization)
11
hg19
Lab
8
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
3
audit script error
assay_title!
WGBS
biosample_type!
tissue
files.file_type!
bed bed3
organ_slims!
vasculature
BIOSAMPLE
ASSAY
12 results
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Clear Filters
Hi-C
pCHi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
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