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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
34
ChIP-seq
9
DNase-seq
8
ATAC-seq
4
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
56
Transcription
34
DNA binding
18
DNA accessibility
4
3D chromatin structure
2
DNA methylation
Target of assay
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
8
control
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
21
October, 2019
12
June, 2019
8
July, 2019
6
November, 2017
1
March, 2020
Available data
108
bam
93
bigWig
56
tsv
39
bed narrowPeak
27
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
11
bed bed3+
6
fastq
6
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
114
Homo sapiens
Biosample type
392
tissue
66
cell line
48
primary cell
1
in vitro differentiated cells
Organ
438
epithelium
414
liver
391
pancreas
103
vasculature
97
blood vessel
79
heart
69
blood
69
bodily fluid
68
artery
55
kidney
39
connective tissue
22
vein
21
brain
14
musculature of body
8
embryo
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
114
AMP
Genome assembly (visualization)
103
hg19
94
GRCh38
Lab
114
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
1
audit script error
assay_title!
WGBS
BIOSAMPLE
ASSAY
114 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
cardiac fibroblast
5
3
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
cardiac atrium fibroblast
1
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