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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
WGBS
Assay category
405
DNA binding
104
Transcription
12
DNA accessibility
Target of assay
298
transcription factor
89
recombinant protein
70
control
54
RNA binding protein
34
histone
34
histone modification
20
chromatin remodeller
18
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
95
February, 2021
45
November, 2018
29
October, 2019
15
November, 2019
8
August, 2021
5
January, 2019
5
March, 2020
5
May, 2021
Available data
521
bam
452
bigWig
366
fastq
336
bed narrowPeak
301
bigBed narrowPeak
110
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
1
txt
Organism
521
Homo sapiens
Biosample type
1865
tissue
521
cell line
429
primary cell
291
in vitro differentiated cells
3
stem cell
Organ
365
liver
66
artery
66
blood vessel
66
heart
66
vasculature
63
pancreas
60
blood
bodily fluid
51
epithelium
15
kidney
8
embryo
Project
517
AMP
4
T1D
Genome assembly (visualization)
455
hg19
408
GRCh38
Lab
521
AMP-T2D consortium
Audit category:
62
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
WGBS
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
521 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
cell line
HepG2
359
5
1
smooth muscle cell of the coronary artery
6
52
8
EndoC_BH1
15
33
1
Panc1
13
1
H1-hESC
8
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