Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
Hi-C
3
pCHi-C
Assay category
8
3D chromatin structure
Date released
5
March, 2020
3
October, 2022
2
October, 2019
1
August, 2018
Available data
873
bam
847
bigWig
529
fastq
407
bed narrowPeak
390
tsv
136
tagAlign
112
zippedFastqFolder
110
bigBed narrowPeak
56
bed bed3+
48
bed broadPeak
48
bigBed broadPeak
11
bedpe bed3+
10
hic
9
bed bedMethyl
9
bigBed bedMethyl
7
bed bedgraph
6
bed bed3
3
cool
3
hdf5
3
txt
2
csv
2
ibed
1
tar
Organism
11
Homo sapiens
Biosample type
9
tissue
7
in vitro differentiated cells
4
primary cell
1
cell line
Organ
4
epithelium
3
pancreas
1
adipose tissue
1
blood vessel
1
connective tissue
1
vasculature
1
vein
Project
8
AMP
3
HPAP
Genome assembly (visualization)
10
hg19
Lab
8
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
3
audit script error
assay_title!
WGBS
organ_slims!
liver
BIOSAMPLE
ASSAY
11 results
search-icon
table-tab-icon
Clear Filters
Hi-C
pCHi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
Download