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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
163
ChIP-seq
Assay category
163
DNA binding
Target of assay
334
histone
334
histone modification
170
broad histone mark
163
narrow histone mark
70
control
57
transcription factor
19
RNA binding protein
3
chromatin remodeller
Date released
63
May, 2021
38
August, 2017
15
September, 2018
11
June, 2019
9
October, 2019
8
December, 2017
8
February, 2018
7
August, 2021
3
November, 2017
1
May, 2019
Available data
145
bigWig
137
bam
137
bed narrowPeak
68
fastq
57
tagAlign
26
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
4
bed bed3+
Organism
163
Homo sapiens
Biosample type
280
tissue
113
primary cell
50
in vitro differentiated cells
10
cell line
1
stem cell
Organ
43
epithelium
32
pancreas
20
connective tissue
8
embryo
8
vasculature
7
blood vessel
liver
6
vein
5
kidney
4
musculature of body
3
brain
2
heart
1
eye
Project
123
AMP
40
T1D
Genome assembly (visualization)
145
hg19
135
GRCh38
Lab
103
AMP-T2D consortium
60
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
Audit category:
24
missing controlled_by
Audit category:
7
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
WGBS
organ_slims!
liver
BIOSAMPLE
ASSAY
163 results
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Clear Filters
ChIP-seq
primary cell
monocyte
41
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
+ See 16 more…
in vitro differentiated cells
adipocyte
16
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
Hepatic endoderm
2
+ See 6 more…
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