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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
54
ChIP-seq
21
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
138
Transcription
54
DNA binding
21
DNA accessibility
4
3D chromatin structure
Target of assay
37
control
34
histone
histone modification
19
broad histone mark
17
transcription factor
15
narrow histone mark
5
RNA binding protein
Date released
107
May, 2021
26
February, 2021
23
February, 2018
16
August, 2021
14
February, 2023
13
August, 2017
8
December, 2017
8
March, 2020
6
October, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
212
bam
181
bigWig
131
tsv
76
fastq
bed narrowPeak
17
bed bed3+
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
228
Homo sapiens
Biosample type
1658
tissue
725
primary cell
254
cell line
228
in vitro differentiated cells
8
stem cell
Organ
40
connective tissue
14
embryo
6
epithelium
1
adipose tissue
1
heart
1
liver
1
pancreas
Project
228
AMP
Genome assembly (visualization)
166
hg19
137
GRCh38
4
hg18
Lab
198
AMP-T2D consortium
27
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
102
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
assay_title!
WGBS
files.file_type!
bed narrowPeak
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
228 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
7
18
5
1
adipocyte
5
13
7
1
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
7
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