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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
WGBS
32
ChIP-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
288
DNA accessibility
32
DNA binding
11
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
93
May, 2022
88
February, 2023
88
May, 2021
59
September, 2020
48
July, 2018
43
April, 2018
42
February, 2021
41
September, 2018
32
June, 2019
31
July, 2019
19
August, 2017
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
396
bam
373
bigWig
325
fastq
264
tsv
112
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
794
Homo sapiens
Biosample type
tissue
794
primary cell
262
cell line
233
in vitro differentiated cells
8
stem cell
Organ
288
epithelium
241
pancreas
30
connective tissue
24
kidney
18
vasculature
15
brain
14
blood vessel
11
liver
10
heart
8
blood
8
bodily fluid
7
vein
6
musculature of body
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
396
AMP
277
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
388
hg19
329
GRCh38
Lab
391
AMP-T2D consortium
277
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
34
inconsistent ontology term
31
audit script error
assay_title!
WGBS
biosample_type!
tissue
target.investigated_as!
histone modification
transcription factor
BIOSAMPLE
ASSAY
794 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
6
1
monocyte
54
15
1
1
pancreatic beta cell
21
23
12
6
1
exocrine cell
39
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