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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
156
ChIP-seq
56
snATAC-seq
WGBS
25
DNase-seq
17
pCHi-C
9
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
281
DNA accessibility
156
DNA binding
10
DNA methylation
6
3D chromatin structure
Target of assay
122
histone
122
histone modification
62
broad histone mark
60
narrow histone mark
29
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
122
May, 2021
93
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
51
June, 2019
48
July, 2018
47
August, 2017
43
April, 2018
42
February, 2021
26
July, 2019
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
584
bigWig
577
bam
397
fastq
274
bed narrowPeak
262
tsv
112
zippedFastqFolder
tagAlign
88
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
904
Homo sapiens
Biosample type
2381
tissue
904
primary cell
581
cell line
347
in vitro differentiated cells
10
stem cell
Organ
355
epithelium
299
pancreas
39
connective tissue
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
10
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
506
AMP
277
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
498
hg19
416
GRCh38
Lab
471
AMP-T2D consortium
277
Klaus Kaestner, Upenn
155
Kyle Gaulton, UCSD
1
ITG
Audit category:
53
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
WGBS
files.file_type!
bed bedgraph
tagAlign
organ_slims!
vasculature
BIOSAMPLE
ASSAY
904 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
13
1
monocyte
54
15
1
1
1
pancreatic beta cell
21
23
12
13
1
CD8-positive, alpha-beta T cell
4
2
33
1
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