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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
88
total RNA-seq
72
ATAC-seq
70
single cell RNA-seq
WGBS
18
DNase-seq
5
Hi-C
1
FAIRE-seq
Assay category
158
Transcription
92
DNA binding
91
DNA accessibility
5
3D chromatin structure
Target of assay
66
histone
66
histone modification
35
narrow histone mark
31
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
61
September, 2018
39
May, 2022
37
February, 2023
33
April, 2018
33
July, 2018
33
October, 2019
29
August, 2017
20
June, 2019
19
September, 2020
July, 2019
7
August, 2020
6
November, 2017
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
237
bam
232
fastq
224
bigWig
106
bed narrowPeak
105
tsv
61
bigBed narrowPeak
39
zippedFastqFolder
22
bed broadPeak
22
bigBed broadPeak
19
bed bed3+
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
1
tar
Organism
346
Homo sapiens
Biosample type
346
primary cell
79
cell line
24
in vitro differentiated cells
15
tissue
Organ
346
epithelium
299
pancreas
32
vasculature
31
connective tissue
29
kidney
27
blood vessel
22
vein
14
brain
12
liver
11
musculature of body
8
blood
8
bodily fluid
8
heart
4
eye
1
bone element
1
bone marrow
Project
241
AMP
105
HPAP
Genome assembly (visualization)
220
GRCh38
214
hg19
Lab
241
AMP-T2D consortium
105
Klaus Kaestner, Upenn
Audit category:
9
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
WGBS
files.file_type!
bedpe
month_released!
July, 2019
BIOSAMPLE
ASSAY
346 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
pancreatic alpha cell
13
52
35
12
1
pancreatic beta cell
13
21
23
12
1
pancreatic acinar cell
8
4
9
12
1
pancreatic ductal cell
13
4
4
10
endothelial cell of umbilical vein
17
2
2
1
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