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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
243
total RNA-seq
199
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
WGBS
30
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
429
Transcription
286
DNA accessibility
247
DNA binding
11
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
203
May, 2021
147
May, 2020
93
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
July, 2018
47
June, 2019
46
August, 2017
43
April, 2018
42
February, 2021
31
October, 2019
28
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
598
bigWig
571
bam
387
fastq
293
bed narrowPeak
257
tsv
112
zippedFastqFolder
108
bigBed narrowPeak
98
tagAlign
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1000
Homo sapiens
Biosample type
2561
tissue
1000
primary cell
575
cell line
357
in vitro differentiated cells
9
stem cell
Organ
338
epithelium
287
pancreas
33
kidney
33
vasculature
30
connective tissue
28
blood vessel
20
vein
15
brain
13
liver
12
musculature of body
11
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
518
AMP
277
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
612
hg19
527
GRCh38
Lab
486
AMP-T2D consortium
277
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
WGBS
month_released!
November, 2020
target.investigated_as!
control
BIOSAMPLE
ASSAY
1000 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
7
52
35
12
1
pancreatic beta cell
7
21
23
12
1
exocrine cell
39
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