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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
236
total RNA-seq
198
ATAC-seq
183
single cell RNA-seq
56
snATAC-seq
WGBS
24
DNase-seq
15
pCHi-C
9
Hi-C
8
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
419
Transcription
279
DNA accessibility
257
DNA binding
9
3D chromatin structure
9
DNA methylation
Target of assay
221
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
30
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
93
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
46
July, 2018
41
April, 2018
39
February, 2021
34
October, 2019
27
June, 2019
20
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
570
bigWig
560
bam
400
fastq
269
bed narrowPeak
247
tsv
112
zippedFastqFolder
100
tagAlign
85
bigBed narrowPeak
42
bed broadPeak
42
bigBed broadPeak
28
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
988
Homo sapiens
Biosample type
2128
tissue
988
primary cell
661
cell line
297
in vitro differentiated cells
9
stem cell
Organ
359
epithelium
299
pancreas
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
507
AMP
277
HPAP
203
T1D
1
ITG
Genome assembly (visualization)
582
hg19
493
GRCh38
Lab
472
AMP-T2D consortium
277
Klaus Kaestner, Upenn
238
Kyle Gaulton, UCSD
1
ITG
Audit category:
33
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
WGBS
organ_slims!
connective tissue
musculature of body
BIOSAMPLE
ASSAY
988 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
52
35
12
1
pancreatic beta cell
13
21
23
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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