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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
DNase-seq
11
ChIP-seq
8
total RNA-seq
4
Hi-C
4
RRBS
1
FAIRE-seq
Assay category
18
DNA accessibility
11
DNA binding
8
Transcription
4
3D chromatin structure
4
DNA methylation
Target of assay
histone
27
histone modification
14
broad histone mark
13
narrow histone mark
7
control
4
RNA binding protein
4
transcription factor
Date released
15
June, 2019
12
July, 2019
11
October, 2019
4
November, 2017
2
May, 2019
1
March, 2020
Available data
35
bam
32
bigWig
20
bed narrowPeak
20
bigBed narrowPeak
17
bed bed3+
17
bed broadPeak
17
bigBed broadPeak
8
tsv
4
bed bedMethyl
4
bigBed bedMethyl
4
fastq
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
45
Homo sapiens
Biosample type
356
tissue
85
cell line
45
primary cell
Organ
293
epithelium
241
pancreas
31
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
45
AMP
Genome assembly (visualization)
32
hg19
27
GRCh38
Lab
45
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
1
audit script error
assay_title!
WGBS
target.investigated_as!
histone
BIOSAMPLE
ASSAY
45 results
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DNase-seq
ChIP-seq
total RNA-seq
Hi-C
RRBS
FAIRE-seq
primary cell
endothelial cell of umbilical vein
2
2
2
1
epithelial cell of proximal tubule
1
3
1
1
kidney epithelial cell
1
2
1
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
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