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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
934
total RNA-seq
687
ChIP-seq
231
ATAC-seq
168
DNase-seq
165
single cell RNA-seq
87
RNA microarray
23
pCHi-C
18
snATAC-seq
WGBS
16
Hi-C
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1115
Transcription
687
DNA binding
419
DNA accessibility
16
3D chromatin structure
8
DNA methylation
Target of assay
554
histone
554
histone modification
296
narrow histone mark
258
broad histone mark
120
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
118
July, 2018
115
May, 2019
104
August, 2017
95
February, 2023
82
November, 2017
80
April, 2019
65
July, 2019
47
September, 2023
42
May, 2022
40
May, 2021
40
May, 2024
40
November, 2019
38
March, 2020
25
February, 2020
16
October, 2018
15
May, 2023
8
January, 2021
6
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1890
bam
1756
bigWig
1074
tsv
984
bed narrowPeak
561
bigBed narrowPeak
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2361
Homo sapiens
Biosample type
2362
tissue
638
primary cell
253
in vitro differentiated cells
235
cell line
6
stem cell
Organ
501
connective tissue
442
adipose tissue
305
heart
299
kidney
292
pancreas
275
liver
253
brain
158
bone element
131
blood vessel
131
vasculature
121
limb
79
musculature of body
73
artery
56
eye
43
nerve
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
urinary bladder
Project
2284
AMP
47
KPMP
31
T1D
Genome assembly (visualization)
1571
GRCh38
1461
hg19
Lab
2055
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
9
audit script error
assay_title!
WGBS
files.file_type!
fastq
organ_slims!
lung
urinary bladder
BIOSAMPLE
ASSAY
2362 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
195
43
48
4
7
3
1
4
liver
167
78
20
1
1
1
1
kidney
49
27
75
13
64
6
1
1
1
bone element
84
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