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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
717
ChIP-seq
177
DNase-seq
65
ATAC-seq
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
3
RRBS
Assay category
923
Transcription
717
DNA binding
246
DNA accessibility
3
DNA methylation
Target of assay
467
histone modification
466
histone
243
narrow histone mark
223
broad histone mark
161
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
186
October, 2019
171
August, 2017
163
June, 2019
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
69
November, 2017
55
July, 2019
48
December, 2017
39
November, 2019
38
May, 2021
24
May, 2022
20
November, 2018
17
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
September, 2017
1
March, 2019
Available data
1884
bam
1756
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
361
fastq
238
tagAlign
213
bed broadPeak
203
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1882
Homo sapiens
Biosample type
1889
tissue
770
primary cell
583
cell line
296
in vitro differentiated cells
4
stem cell
Organ
496
connective tissue
438
adipose tissue
420
pancreas
289
liver
227
brain
126
heart
113
limb
98
kidney
85
blood vessel
85
vasculature
66
bone element
45
musculature of body
42
nerve
34
artery
22
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
1887
AMP
2
T1D
Genome assembly (visualization)
1686
GRCh38
1650
hg19
Lab
1863
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
WGBS
month_released!
September, 2017
BIOSAMPLE
ASSAY
1889 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
FAIRE-seq
RRBS
tissue
adipose tissue
381
2
islet of Langerhans
266
24
1
39
6
1
liver
147
122
2
1
1
bone tissue
58
body of pancreas
2
35
4
4
2
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