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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
723
ChIP-seq
174
DNase-seq
65
ATAC-seq
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
3
RRBS
Assay category
923
Transcription
723
DNA binding
243
DNA accessibility
3
DNA methylation
Target of assay
467
histone modification
466
histone
243
narrow histone mark
223
broad histone mark
167
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
186
October, 2019
171
August, 2017
160
June, 2019
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
69
November, 2017
55
July, 2019
48
December, 2017
39
November, 2019
38
May, 2021
24
May, 2022
20
November, 2018
17
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1887
bam
1753
bigWig
1071
tsv
954
bed narrowPeak
558
bigBed narrowPeak
367
fastq
238
tagAlign
210
bed broadPeak
202
bed bed3+
173
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1885
Homo sapiens
Biosample type
1892
tissue
771
primary cell
583
cell line
296
in vitro differentiated cells
4
stem cell
Organ
496
connective tissue
438
adipose tissue
426
pancreas
289
liver
227
brain
126
heart
113
limb
98
kidney
85
blood vessel
85
vasculature
66
bone element
45
musculature of body
42
nerve
34
artery
22
spleen
18
ureter
8
skeleton
eye
1
pituitary gland
Project
1890
AMP
2
T1D
Genome assembly (visualization)
1685
GRCh38
1649
hg19
Lab
1866
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
WGBS
organ_slims!
eye
BIOSAMPLE
ASSAY
1892 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
FAIRE-seq
RRBS
tissue
adipose tissue
381
2
islet of Langerhans
266
30
1
39
6
1
liver
147
122
2
1
1
bone tissue
58
body of pancreas
2
35
4
4
2
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