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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
359
ChIP-seq
109
DNase-seq
3
ATAC-seq
3
FAIRE-seq
Assay category
359
DNA binding
115
DNA accessibility
Target of assay
294
histone
294
histone modification
194
broad histone mark
100
narrow histone mark
65
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
95
June, 2019
93
May, 2019
57
November, 2017
47
October, 2019
46
April, 2019
45
October, 2018
36
December, 2017
22
August, 2017
17
November, 2018
6
January, 2019
6
October, 2017
3
December, 2018
1
July, 2019
Available data
1792
bam
1665
bigWig
1039
tsv
831
bed narrowPeak
474
bigBed narrowPeak
367
fastq
238
tagAlign
145
bed broadPeak
137
bed bed3+
108
bigBed broadPeak
95
txt
10
bedpe bed3+
10
hic
8
bed bedMethyl
8
bigBed bedMethyl
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
468
Homo sapiens
Biosample type
474
tissue
354
cell line
93
primary cell
17
in vitro differentiated cells
Organ
116
brain
88
heart
kidney
84
limb
62
blood vessel
62
pancreas
62
vasculature
49
liver
38
musculature of body
26
nerve
25
artery
18
ureter
13
spleen
10
adipose tissue
10
connective tissue
3
eye
Project
474
AMP
Genome assembly (visualization)
469
GRCh38
407
hg19
Lab
474
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
WGBS
month_released!
February, 2020
organ_slims!
kidney
BIOSAMPLE
ASSAY
474 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
heart
7
18
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