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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
895
total RNA-seq
347
ChIP-seq
177
DNase-seq
43
ATAC-seq
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
917
Transcription
347
DNA binding
224
DNA accessibility
Target of assay
522
histone modification
521
histone
narrow histone mark
253
broad histone mark
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
163
June, 2019
150
August, 2017
143
May, 2020
116
July, 2018
60
May, 2019
55
July, 2019
54
October, 2019
42
April, 2019
38
May, 2021
37
November, 2017
34
December, 2017
34
October, 2018
25
May, 2024
20
May, 2022
19
November, 2019
17
November, 2018
13
October, 2017
9
March, 2020
6
April, 2018
4
January, 2019
3
December, 2018
2
January, 2018
Available data
1647
bam
1488
bigWig
1076
tsv
718
bed narrowPeak
453
bigBed narrowPeak
339
fastq
199
bed bed3+
198
bed broadPeak
176
bigBed broadPeak
157
txt
128
tagAlign
64
xls
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
1
bedpe
Organism
1484
Homo sapiens
Biosample type
1488
tissue
502
cell line
501
primary cell
219
in vitro differentiated cells
2
stem cell
Organ
477
connective tissue
419
adipose tissue
341
pancreas
229
liver
113
heart
99
brain
81
kidney
76
limb
58
bone element
51
blood vessel
51
vasculature
49
musculature of body
23
nerve
21
artery
18
ureter
12
spleen
3
eye
Project
1488
AMP
Genome assembly (visualization)
1447
GRCh38
1410
hg19
Lab
1442
AMP-T2D consortium
25
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
assay_title!
WGBS
month_released!
May, 2023
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
1488 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
islet of Langerhans
260
17
1
3
6
1
liver
147
48
2
20
1
bone tissue
58
body of pancreas
2
20
4
4
2
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