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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
925
total RNA-seq
238
ChIP-seq
109
single cell RNA-seq
20
pCHi-C
16
small RNA-seq
3
snDrop-seq
2
RNA microarray
1
ATAC-seq
Assay category
1050
Transcription
238
DNA binding
1
DNA accessibility
Target of assay
186
histone
186
histone modification
110
narrow histone mark
76
broad histone mark
52
control
Date released
452
February, 2021
193
May, 2020
148
August, 2017
116
July, 2018
99
August, 2021
66
November, 2017
57
October, 2019
47
July, 2019
38
May, 2021
28
March, 2020
25
February, 2020
19
November, 2019
14
October, 2017
6
April, 2018
4
February, 2023
2
December, 2019
Available data
1890
bam
1756
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
367
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1307
Homo sapiens
Biosample type
1314
tissue
364
primary cell
171
in vitro differentiated cells
139
cell line
4
stem cell
Organ
465
connective tissue
407
adipose tissue
291
pancreas
224
liver
141
brain
111
heart
58
bone element
22
musculature of body
14
blood vessel
14
vasculature
12
kidney
7
limb
5
eye
5
nerve
4
artery
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
1314
AMP
Genome assembly (visualization)
1033
GRCh38
1023
hg19
Lab
1313
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
7
audit script error
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent assembly
assay_title!
WGBS
month_released!
August, 2022
BIOSAMPLE
ASSAY
1314 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
pCHi-C
small RNA-seq
snDrop-seq
RNA microarray
ATAC-seq
tissue
adipose tissue
381
1
islet of Langerhans
261
9
6
1
liver
147
70
1
1
bone tissue
58
heart left ventricle
3
18
1
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