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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
711
ChIP-seq
619
total RNA-seq
215
ATAC-seq
149
DNase-seq
87
single cell RNA-seq
86
RNA microarray
28
snATAC-seq
21
pCHi-C
13
Hi-C
WGBS
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
719
Transcription
711
DNA binding
396
DNA accessibility
13
3D chromatin structure
10
DNA methylation
Target of assay
501
histone modification
500
histone
274
narrow histone mark
226
broad histone mark
147
control
65
transcription factor
13
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
233
October, 2019
224
August, 2017
193
May, 2020
159
February, 2021
136
August, 2021
135
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
66
May, 2022
58
February, 2023
51
October, 2018
48
December, 2017
47
September, 2023
43
July, 2019
39
November, 2019
38
May, 2021
32
March, 2020
23
April, 2019
22
October, 2017
20
February, 2020
19
April, 2020
19
November, 2018
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1326
bam
1184
bigWig
798
bed narrowPeak
566
tsv
463
bigBed narrowPeak
327
fastq
230
tagAlign
183
bed broadPeak
172
bed bed3+
157
txt
147
bigBed broadPeak
64
xls
8
bed bedMethyl
8
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1955
Homo sapiens
Biosample type
1963
tissue
749
primary cell
595
cell line
392
in vitro differentiated cells
10
stem cell
Organ
541
connective tissue
501
pancreas
adipose tissue
357
liver
heart
299
kidney
265
brain
158
bone element
131
blood vessel
131
vasculature
121
limb
81
musculature of body
73
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1866
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1238
GRCh38
1218
hg19
Lab
1651
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
WGBS
lab.title!
Klaus Kaestner, Upenn
organ_slims!
adipose tissue
heart
BIOSAMPLE
ASSAY
1963 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
71
292
68
1
6
7
4
3
1
1
4
liver
145
167
20
2
1
1
1
1
1
kidney
27
49
75
13
64
6
1
1
1
bone element
84
bone tissue
58
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