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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
39
ATAC-seq
27
DNase-seq
15
total RNA-seq
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
123
DNA binding
109
Transcription
66
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
21
May, 2019
12
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
173
bed narrowPeak
151
bigWig
126
bam
111
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
3
bedpe bed3+
3
hic
1
bed bedMethyl
1
bigBed bedMethyl
Organism
305
Homo sapiens
Biosample type
305
tissue
66
cell line
13
primary cell
1
in vitro differentiated cells
Organ
541
connective tissue
501
pancreas
adipose tissue
357
liver
305
heart
299
kidney
265
brain
158
bone element
131
blood vessel
131
vasculature
121
limb
81
musculature of body
73
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
305
AMP
Genome assembly (visualization)
185
GRCh38
113
hg19
Lab
265
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
assay_title!
WGBS
lab.title!
Klaus Kaestner, Upenn
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
305 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
total RNA-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
3
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
36
2
1
heart
14
1
18
4
1
1
heart right ventricle
13
17
1
1
1
1
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