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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
942
total RNA-seq
730
ChIP-seq
258
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
WGBS
16
Hi-C
16
small RNA-seq
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1138
Transcription
730
DNA binding
465
DNA accessibility
16
3D chromatin structure
6
DNA methylation
Target of assay
503
histone
503
histone modification
273
narrow histone mark
230
broad histone mark
158
control
71
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2017
241
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
65
July, 2019
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
20
November, 2018
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1722
bam
1580
bigWig
987
tsv
918
bed narrowPeak
539
bigBed narrowPeak
196
fastq
187
bed broadPeak
179
bed bed3+
179
tagAlign
176
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2472
Homo sapiens
Biosample type
2474
tissue
982
primary cell
661
cell line
326
in vitro differentiated cells
10
stem cell
Organ
490
connective tissue
431
adipose tissue
354
pancreas
306
liver
305
heart
299
kidney
265
brain
158
bone element
131
blood vessel
131
vasculature
121
limb
73
artery
56
eye
55
musculature of body
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2377
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1687
GRCh38
1575
hg19
Lab
2122
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
assay_title!
WGBS
month_released!
August, 2017
organ_slims!
lymph node
BIOSAMPLE
ASSAY
2474 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
203
28
68
6
7
4
3
1
4
liver
167
97
20
1
2
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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