Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
444
total RNA-seq
84
RNA microarray
12
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
1
Hi-C
Assay category
450
Transcription
12
DNA accessibility
1
3D chromatin structure
Date released
545
February, 2021
275
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
65
July, 2019
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
20
November, 2018
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
August, 2022
Available data
453
bam
452
tsv
444
bigWig
89
txt
8
bed narrowPeak
6
csv
1
bed broadPeak
1
bedpe
1
fastq
1
hic
Organism
550
Homo sapiens
Biosample type
550
tissue
96
cell line
42
primary cell
26
in vitro differentiated cells
Organ
444
connective tissue
386
adipose tissue
150
bone element
8
kidney
8
skeleton
6
limb
5
pancreas
1
liver
Project
550
AMP
Genome assembly (visualization)
455
hg19
454
GRCh38
Lab
545
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
84
inconsistent ontology term
5
audit script error
assay_title!
WGBS
month_released!
August, 2022
BIOSAMPLE
ASSAY
550 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
RNA microarray
ATAC-seq
single cell RNA-seq
snDrop-seq
Hi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
islet of Langerhans
4
1
kidney
5
+ See 14 more…
See all biosamples
Download