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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
634
total RNA-seq
254
ATAC-seq
238
ChIP-seq
180
single cell RNA-seq
176
DNase-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
828
Transcription
462
DNA accessibility
238
DNA binding
16
3D chromatin structure
11
DNA methylation
Target of assay
histone modification
595
histone
312
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
228
August, 2021
166
May, 2020
162
June, 2019
159
February, 2021
132
August, 2017
120
July, 2018
94
February, 2023
73
October, 2019
66
May, 2022
55
July, 2019
47
September, 2023
43
December, 2017
40
May, 2021
39
November, 2019
37
March, 2020
26
May, 2019
23
February, 2020
21
October, 2018
20
April, 2019
19
April, 2020
19
November, 2018
14
May, 2023
12
November, 2017
10
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
1
January, 2019
Available data
987
bam
815
bigWig
677
tsv
453
bed narrowPeak
254
fastq
240
bigBed narrowPeak
187
bed bed3+
176
bed broadPeak
174
bigBed broadPeak
157
txt
64
xls
51
tagAlign
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
1
bedpe
Organism
1670
Homo sapiens
Biosample type
1672
tissue
802
primary cell
623
cell line
281
in vitro differentiated cells
8
stem cell
Organ
508
connective tissue
adipose tissue
428
pancreas
287
liver
279
kidney
210
heart
158
bone element
81
brain
77
blood vessel
77
vasculature
72
limb
56
musculature of body
54
eye
53
artery
20
lung
19
nerve
18
ureter
17
spleen
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1577
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
930
GRCh38
895
hg19
Lab
1355
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
6
missing controlled_by
assay_title!
WGBS
organ_slims!
adipose tissue
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
1672 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
68
20
6
1
7
4
3
1
1
4
liver
167
20
80
1
2
1
1
1
1
kidney
49
75
7
64
13
6
1
1
1
bone element
84
bone tissue
58
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