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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ATAC-seq
21
ChIP-seq
7
total RNA-seq
6
single cell RNA-seq
5
DNase-seq
WGBS
1
Hi-C
1
pCHi-C
Assay category
43
DNA accessibility
21
DNA binding
13
Transcription
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
broad histone mark
18
narrow histone mark
control
3
RNA binding protein
3
transcription factor
Date released
35
February, 2023
17
May, 2019
7
October, 2019
6
August, 2021
5
July, 2019
3
February, 2020
3
June, 2019
3
March, 2020
Available data
64
bed narrowPeak
33
bam
33
bigWig
26
bigBed narrowPeak
14
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bedpe bed3+
1
hic
Organism
79
Homo sapiens
Biosample type
79
tissue
64
cell line
19
primary cell
Organ
497
connective tissue
438
adipose tissue
431
pancreas
286
liver
283
kidney
232
heart
170
brain
158
bone element
79
blood vessel
79
vasculature
70
limb
61
musculature of body
56
eye
52
artery
20
lung
18
ureter
16
nerve
16
skeleton
15
epithelium
11
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
68
GRCh38
34
hg19
Lab
79
AMP-T2D consortium
assay_title!
WGBS
target.investigated_as!
broad histone mark
control
BIOSAMPLE
ASSAY
79 results
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ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
Hi-C
pCHi-C
tissue
coronary artery
36
3
1
2
aorta
4
1
4
1
1
ascending aorta
5
2
1
thoracic aorta
1
5
2
tibial artery
1
4
1
2
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