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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
25
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
2
pCHi-C
1
ATAC-seq
WGBS
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
25
DNA binding
7
Transcription
6
3D chromatin structure
4
DNA methylation
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
control
Date released
32
June, 2019
23
August, 2017
6
July, 2019
6
March, 2020
6
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
56
bigWig
51
bed narrowPeak
45
bed broadPeak
42
bam
38
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
13
tagAlign
8
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
78
Homo sapiens
Biosample type
78
tissue
12
primary cell
Organ
517
connective tissue
472
pancreas
458
adipose tissue
311
liver
293
kidney
289
heart
240
brain
158
bone element
115
blood vessel
115
vasculature
104
limb
77
musculature of body
66
artery
56
eye
32
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
15
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
78
AMP
Genome assembly (visualization)
61
hg19
41
GRCh38
Lab
78
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
WGBS
target.investigated_as!
control
BIOSAMPLE
ASSAY
78 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
ATAC-seq
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
19
1
4
1
1
1
1
muscle of leg
13
6
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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