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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
41
ChIP-seq
35
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
WGBS
Assay category
93
Transcription
41
DNA binding
35
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
5
March, 2020
February, 2020
2
July, 2019
1
April, 2019
1
October, 2019
Available data
218
bigWig
bam
191
bed narrowPeak
165
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
Organism
177
Homo sapiens
Biosample type
176
tissue
1
primary cell
Organ
kidney
209
pancreas
177
heart
160
epithelium
105
liver
93
bone element
85
connective tissue
53
eye
48
vasculature
47
blood vessel
43
adipose tissue
37
artery
37
musculature of body
31
brain
20
lung
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
limb
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
177
AMP
Genome assembly (visualization)
75
GRCh38
6
hg19
Lab
137
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
assay_title!
WGBS
files.file_type!
bam
month_released!
February, 2020
organ_slims!
kidney
BIOSAMPLE
ASSAY
177 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
RRBS
tissue
left cardiac atrium
18
40
coronary artery
35
heart left ventricle
18
1
1
1
1
heart right ventricle
17
1
1
right cardiac atrium
18
1
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primary cell
cardiac fibroblast
1
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