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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
7
total RNA-seq
4
Hi-C
2
ATAC-seq
WGBS
Assay category
66
DNA binding
38
DNA accessibility
7
Transcription
4
3D chromatin structure
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
7
May, 2019
4
July, 2019
3
February, 2020
Available data
107
bam
90
bigWig
86
bed narrowPeak
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
Organism
115
Homo sapiens
Biosample type
115
tissue
Organ
856
pancreas
785
liver
672
connective tissue
485
adipose tissue
438
epithelium
385
heart
354
kidney
285
brain
234
vasculature
228
blood vessel
155
bone element
141
artery
121
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
115
AMP
Genome assembly (visualization)
90
hg19
89
GRCh38
Lab
115
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
WGBS
files.file_type!
bed bed3
zippedFastqFolder
organ_slims!
skeleton
BIOSAMPLE
ASSAY
115 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
1
4
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