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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
117
ChIP-seq
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
117
DNA binding
4
3D chromatin structure
2
DNA methylation
1
DNA accessibility
1
DNA sequencing
Target of assay
108
control
22
histone
histone modification
13
broad histone mark
9
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
167
May, 2020
64
November, 2017
20
May, 2022
18
August, 2021
13
August, 2017
13
December, 2017
9
July, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
1
November, 2018
1
October, 2019
Available data
600
bam
538
bigWig
418
fastq
bed narrowPeak
323
bigBed narrowPeak
174
tsv
49
bed broadPeak
49
bigBed broadPeak
28
tagAlign
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
323
Homo sapiens
Biosample type
224
tissue
90
cell line
8
primary cell
1
in vitro differentiated cells
Organ
657
pancreas
560
connective tissue
442
adipose tissue
323
liver
321
epithelium
194
heart
171
kidney
151
bone element
96
vasculature
94
blood vessel
67
artery
63
brain
29
musculature of body
28
limb
26
eye
22
embryo
20
lung
16
nerve
15
blood
bodily fluid
9
spleen
8
skeleton
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
323
AMP
Genome assembly (visualization)
186
hg19
163
GRCh38
Lab
286
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
assay_title!
WGBS
files.file_type!
bed narrowPeak
organ_slims!
bodily fluid
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
323 results
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Clear Filters
total RNA-seq
ChIP-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
43
1
1
1
1
1
right lobe of liver
3
3
2
1
cell line
HepG2
14
69
2
2
2
1
primary cell
hepatocyte
5
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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